Today we have release Fred2 2.0.2 which adds a couple of new epitope prediction tools and other functionalities.
Added Features:
- NetMHC 4.0
- NetMHCpan 3.0
- NetMHCstabpan 1.0
- CalisImmunoscore
- ParetoAssembler: String-of-beads assembler that simultaneously optimizes cleavage likelihood and neo-immunogenicity
- Support of complex HLA-DRQ,DP alleles via CombinedAllele class
Misc:
- ILP models were updated to support Pyomo 4.3
- Smaller bugfixes