Articles • FRED 2

Fred 2 Release v2.0.2

Thursday, July 07, 2016

Today we have release Fred2 2.0.2 which adds a couple of new epitope prediction tools and other functionalities. Added Features: NetMHC 4.0 NetMHCpan 3.0 NetMHCstabpan 1.0 CalisImmunoscore ParetoAssembler: String-of-beads assembler that simultaneously optimizes cleavage likelihood and neo-immunogenicity Support of complex HLA-DRQ,DP alleles via CombinedAllele class Misc: ILP models were updated...

String-of-Beads design

Monday, February 29, 2016

We added a new approach for string-of-beads design. It optimally designs spacer sequences and the odering of the therapeutic epitopes to maximize the epitope’s recovery probabilities and simmultaniously reduces the risk of neo-epitope formation at the junctions between epitopes. You can check out the original publication here: Schubert, B., &...

FRED 2 is published in Bioinformatics!

Monday, February 29, 2016

We are happy to announce that FRED 2 got published in Bioinformatics. Check it out: Schubert, B., Walzer, M., Brachvogel, H-P., Sozolek, A., Mohr, C., and Kohlbacher, O. (2016). FRED 2 - An Immunoinformatics Framework for Python. Bioinformatics 2016; doi: 10.1093/bioinformatics/btw113 When working with FRED 2, please also cite the...

Fred 2 Release v2.0.1

Friday, December 18, 2015

Today we have release Fred2 2.0.1 that fixes a couple of small errors in the Fred2 2.0.0 release. Fred2 2.0.1 is available for download at: https://github.com/FRED-2/Fred2/releases/tag/v2.0.1 or can be installed via pip with: pip install git+https://github.com/FRED-2/Fred2

Landing Page Launched

Thursday, October 29, 2015

We are proud to announce the launch of FRED2’s own landing page. We will keep you updated on new developments and upcoming releases. If you want to get involved in developing FRED2 further, or have some questions and comments, feel free to contact us (schubert@informatik.uni-tuebingen.de) or open up an issue...